ReproMatch

Tool Details

GenePattern

GenePattern is a platform specific to genomic analysis that allows users to create, share and manage scientific workflows.

Website:
http://www.broadinstitute.org/cancer/software/genepattern/
Publication:
http://doi.org/10.1038/ng0506-500
Tags:
workflow system genomic analysis Java OS Support OS X: True Windows: True Linux: True Web-based: True Provenance Capture: True OS-Based: False Code-Based: False Workflow-Based: True Data-Based: False Representation: True Descriptive-Only: False Executable: True Replicability: True Modifiability: True Portability: Low Note: High portability for the Web-based application. Longevity: False Document linkage: True By Reference: False Inline: True Note: GenePattern has a Microsoft Word plugin that enables users to embed workflows and data in Word documents. Experiment sharing: True Archival: False Hosted Execution: True Note: Hosted execution is supported by having a Web server where pipelines can be stored, executed and shared.